Scaffold Ga0114974_10005303

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10005303
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9615
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008423	Metagenome	333	Y
F024312	Metagenome	206	N
F035308	Metagenome	172	Y
F038998	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100053031	F008423	N/A	EKQLKLHKRATMLLELLKQAQGRQNLFEADLAEWRRGLDDTRTMISEEDLLIKVARMNDIQRRILKSYHFLILDLYTLTEEFMLPINLLHF*
Ga0114974_1000530314	F035308	AGCAG	LKDISSIYATCKEEQIAGYSCYSFVIDGTTHYIFGETKEEAFDYMADLINKYGES*
Ga0114974_100053035	F024312	N/A	MTPLNKLWDLREEVKFWNYKFDTSYTHNAREILDKLNAAKEELKNHKLKYFPKLLNQPKRNYIPYEMLTDKFEVFENYLND*
Ga0114974_100053037	F038998	N/A	MIVLNICKEEINWKEAKNGKHYANVATDFLKEPDDKGNTHTVWNNQSQEERAEKAKKNYCGRGKQVSYNAPTAKKEFAVNQQESEDDLPF*