Scaffold Ga0114974_10005282

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10005282
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9632
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (54.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012023	Metagenome / Metatranscriptome	284	Y
F014503	Metagenome / Metatranscriptome	262	Y
F053829	Metagenome / Metatranscriptome	140	Y
F100256	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100052821	F012023	GGA	MEKIDYSKLNERIVEQAYENVLTKEQFQKLIQDKFERAKVYQESMRKSPTYSVN*
Ga0114974_1000528210	F014503	N/A	MRKKRMLTDKEYDIAASVRHWRFEDGNTCPNPTLPEGRGRLDPPPRGWYCWVYPKDDSAFADWMERMCPKADITHRFNSGDPMWTVYIKDDAEATVFQLMYGN*
Ga0114974_1000528211	F100256	N/A	MAMIRVSTKDETFNRAWANAHRALPVETLERPRQYGQRWREAYRCRVDPTDSKLGETYYIFDRDEDYTWFMLKWS*
Ga0114974_1000528214	F053829	N/A	MVTAKTKIATLGELLATRARAIFPYRINFDVIGYQQLPEMKQWCEDNCKGIWRAEHFHALYFQFSDDYDATMFMLRWGTANGNKLR*