Scaffold Ga0114974_10004456

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10004456
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10476
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F010232	Metagenome / Metatranscriptome	306	Y
F010612	Metagenome	301	Y
F015719	Metagenome / Metatranscriptome	252	Y
F020684	Metagenome	222	Y
F022871	Metagenome	212	Y
F029029	Metagenome / Metatranscriptome	189	Y
F046331	Metagenome / Metatranscriptome	151	N
F056557	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000445610	F022871	AGGAG	MSESENVWETDEELWNFIGENKRLVGLQISDGQGLDILNALRDIYITVDDDPKSAMRMLSLLATVIYASSIGEGQQFTDEIQVAAAMEQFDSSMKEMLSEEPK*
Ga0114974_1000445616	F046331	AGGAG	VSHSEAPISITIKTASGSLVTVRASSGEELDAVVATGLAAITSATTELEQAIRGTVPTPMTVGAIASALGASISPMDNSTASLSGRNCPHGHMTAIQGTGKDGSTYRGYFCAAPKGAFDKCKNVYLKTTDAAWSTFVAEQVK*
Ga0114974_1000445618	F015719	AGGAG	MYYTEVDGIEPTVSTQVGGIKYTFTNESLTKLIEEKEQLKVELVQLERKFRSARFDVREFFQSRYETDSNEIVCEVDDVNELLISLETEALTRSWSATVTITATVTGIEAPNAEAAQEILDDAFEVNLTIDGDVWVDDVSVESVHAES*
Ga0114974_1000445623	F010612	GAGG	MLDEDIPVWEHTVWILAKVRCRTTHVDIYTAGDEALDDLNEWHILEFDKGVKHSQEIVRVK*
Ga0114974_1000445625	F010232	AGG	MRSREELLKIKEAFAFAMLDLLDVYDELLATGRIYVADEPTINDLAKNQDESNA*
Ga0114974_1000445626	F056557	N/A	RTGVCMYLDTGTMIGIMIALIASILTIGYSIYIIKTQNEIIQRMSDISATRRKMGR*
Ga0114974_100044564	F020684	N/A	MNRLYSLTPEEEAIAVEVGYQRQKPYFGDPTRNINYSEGDLWELWQHAVAAGSELAFARMIGNTTFVPHFNKWKNELDIPGLGEVRYTFNDQPKLRYTNRDNDSLVYILMADGMRHKTRRAAPDWLGAPYKAVGWLYGSQCKVDTFKYNEKSWYVPAAYLSSMDTLPLEQYVKTI*
Ga0114974_100044567	F029029	AGAAG	MSEEPKEIKDLFKKDYTNSMDLRGHPIGDICVCGSQLFTAIVAFEYGEIAFYFLDGECVDCGSLVTLPTPIDNIGMDCD*
Ga0114974_100044568	F008296	AGG	MTDAWVDEYELLVSTLASEYYRKYPVTETEDIRQVLWVWFLTHPVKYTEWSKLPPKDKERLIARSLRNAALKYCEQEKARKIGYDISDLYYYDSSVIEAFLPSIIGNTYEIPSKIKDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNRLAEAKQNILRIKFSAENYEWSDLGKELDTSAEGARKRVERAISSLVKILGGWRTYSEPDVIESKEENEEHE*