Scaffold Ga0114974_10003536

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10003536
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11756
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008607	Metagenome	330	Y
F053995	Metagenome / Metatranscriptome	140	N
F101268	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000353619	F053995	AGGA	MPQVNRISRGEVSVGGIIGSTGEMVYGLDFGTASVDPASINATTRGSVTFTLTGAKTTDIIIVNPPADLNDDLIFCGAAISAADTVSIYLYNPTGSAINDTARTFSYVWIDMTA*
Ga0114974_1000353622	F101268	N/A	EDASEDFLKSAPESVVKMIEDFKKQAETATEELRKEREAKADADAIEKAKGYTNLNLEAEKIGPALRRLSAVDSDLAKSVEDILTAVNAQAESANIFAEIGKSADFTSGDAYGRMTTMAKSAVEDGSAKTFEQAFASVASQNPELYVQYRNEKGAK*
Ga0114974_100035366	F008607	AGGGGG	MADAIYSKVAEFMTDSVGFYPKSSVDKYNKPTFSATLTTVTGRLIYDTVKSKDVQGVEVTDIGRFVTKGPATTITVSHKMVLGADTFTINAVDNIADENGAHHTVIRFGR*