Scaffold Ga0114974_10002468

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10002468
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14198
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F028717	Metagenome / Metatranscriptome	190	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y
F101171	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000246811	F058146	AGGA	MKLSQLTAKPQLIDIHIDDEDTIKEFGEAIEFWTWDRQPMDVFMKLASASGQDTSGIISVVRTLILDEKGKEILKDDAMLPTHVLMKAIAKVTELLGK*
Ga0114974_1000246812	F003807	N/A	MTQEQVWYKTSEEKLRSLIADEAKMMPMLDNMMATIKQLKAKQAFRLALLNQLLEDLNENE*
Ga0114974_1000246814	F058142	AGGAG	MAAVILNAPTVNTTQIIDVLKRDIPRTWSVPIYDDFPSDDEKVRYGIYVSDVHTNSRNPHQLAIQYCGAIYHAFDVFDVTYISYQDDPYNLDVNAIIANLVTALKDDGQQLMEGYFERNFNQVRTYGPTQAEKHVWTFELTRLEFNT*
Ga0114974_1000246815	F002260	AGGA	MSVPYQRISNATVVDIQFYDPAAERRAAALQVDWAPYFKVASQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDMQNYDFAKMRCETEWTKALQLMNFYDLYMDNPQGPTTKLEENWTADVDYFNGDRRYF*
Ga0114974_1000246816	F011761	AGGA	MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVAPTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLSFKVTPGNTYYATSADGFDRVLELGAMEVIGATNTSGTWTDGFTSNSILDCIRLVKQNFKVARMPGTPVIVMDSNGDAQTQGGYTGGQVGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMIMFTTFLQSATRTVVGQASLPVLVGAYMGDSAIFTVMKEGLQLKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQN*
Ga0114974_1000246817	F028717	AGGA	MDQKSFVGNDSQTNANQSAPGQEGGDEQVNAGAIRKSTTQGLLNALSNASGTQFTSVEDALAYMARTSAQQLGGNAQPVEQPKVQQSSGRVTTNDLHERFNELSQNLARKEQALREKELDSDIQRAMGDKFDTDLLDYALNKVKNNIQWNDDGTYAIVNQKGQERYGSDGMPLTIQGLVTEVAQGNPKLLRQSNSNSGSGLRPGQGSFTGALEETIPDYSRDPAAFNAWANKNGLGKGVGLKGLGVSASVSNSSRKVL*
Ga0114974_100024686	F101171	GGAG	MDNIPAVANNKPLVNNAEFVKLTIYNEYGNTANNNVYTFSSSYQSETIDGDVYSPLGGLLAVGVQQRDIRVTSADTSISLSGIDGNNMSIVLGSLIRGSQLEITRGFYDNNYNLTSNAHRFTGIVTNYQISEERQDQDDNFTITLNASSFKTVLENRIAGRKTNSESWKEYNPTDTSMDRVPSLSDRAFDFGKPPVQVATTQSQAQTDASQIAQDTNTDYSNGGTGL*