Scaffold Ga0114974_10001805

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10001805
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16766
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (47.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021295	Metagenome	219	N
F051079	Metagenome	144	N
F066722	Metagenome	126	Y
F094799	Metagenome	105	Y
F095379	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100018051	F095379	N/A	MLMTKTRHFDSFLTALQPNQISKSGGRTTHCNLIGSSTADWYLVQLNKTSTRDTNRGLSKQALVFERDSRKVSSLTTRIGQAHFSGRELVPNEYAKE
Ga0114974_1000180520	F051079	AGGA	MNEWDRNNLHFILDSDEATLEDFYSWATEDDLAYALSLVREAKTELLIQEADILDELLTNATADDVADASTMLRKFQL*
Ga0114974_1000180523	F094799	N/A	MTLTWHDEYNAMSRWNEMLADIVEVFGLPGDRYITDVNVNDMTFWFRDHRDALLFKLSHGHSELCSA*
Ga0114974_1000180530	F066722	GAG	MMEVGNTKTRFDMEQEIMQAWQVLDDIKMLSAREGTDKEDWDAVVRLYQIRFETLFETFEQLIKAGTIL*
Ga0114974_100018056	F021295	N/A	MQLKAPTPNPAGSHNAVNDRVFYWLVNRDNYCMHEFDDDHIYQYAKSVMFQIMTVLYINGRTEAHVGAIMRLLGVDEEHARLHDDERIELDENFVKLATELNMNELTSVQIPQGTTIH*