NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10001678

Scaffold Ga0114974_10001678


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10001678 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17417
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004863Metagenome420Y
F006099Metagenome381Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_1000167814F006099N/AMTSAKILYLARYRVPHAIMSLQPEFTKHLIGVDRTCIASPVPKDELWAVFEQYGVDTTKFDYAPDSEIYRLYPEVNNWVFEGDYRTYWLRQQAIKFAFLDYLDYDLMIMHDCDCLLIRDYEPFKDGRLNFMVLENERHSWGYYESIKNALGFERLTPHCFISEFVPVLKKDWNDLVKFLEDKHKKKWLDAMIDSCPPEPTVPPWGNGELIRWFSEYEFIGNWAMSRQDITMEFQRRYHYDNMEKIGDFDPAYHTAVCDAVPDLRFSLQYDWDRKEIPKFDYYMDKIRERLARYT*
Ga0114974_1000167816F004863AGGAMKLMVAGCSFSAVSQTLPGTAWSERLAEKLGGWELINLARQGCSNGGIRIQIDEIRRQRPDFAVIGPTFWDRMEIPANSVPYDWTQAPSAGENPPLERHLQNRKLGNGYNREDGIRNVNYGREPSNMICETIFTLAENFDHPYRQGRITKQAQTGVRHWIDSIYDNAWKKQQDEWMIREGVISMFLDDIRFLVLPNLLWPFDPDNTNLWREAFPTLIPAHYINLDSKNSPQAICGNNPFKGKDPGYHSSAAGQEIIAENFYQHWLAYFK*
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