Scaffold Ga0114974_10001640

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10001640
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17591
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F007112	Metagenome	357	Y
F008305	Metagenome / Metatranscriptome	335	Y
F011077	Metagenome / Metatranscriptome	295	Y
F034566	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000164015	F034566	AGG	MSFKLKSIIWVQSALIVILSVFMLFMGGDLKQSRKMTLDQSNYCIRYTSDIIASSRLDLIREQDAHSRTVDKANSVIDDIVNRYNSLVARYNKSTGGTNYDPLNTYSYRIRP*
Ga0114974_1000164017	F011077	GGAGG	MHELMDTNLTWAEEDVNLWKGWTYSIEKNRYYFNDIGDESLASFWADDFLNQAYL*
Ga0114974_1000164028	F007112	GGA	VHTLHYIAVEADSKQEAFDKVVVSLQSNEDGYRLADWSDWHVVGGGRWSTNANKKSENNLMGGYNDDPTDVIGYAENKEKFQEVVKDILRFRSQTMNRNIVEIKTDKFISQMVDYASEGGRGPWNGDTLMNVYSIKQAAEMLMGSWTSDSGFYDLQEHVSEFEYLDERLDKPDRAVRQYLVPVDFHF*
Ga0114974_1000164032	F008305	AGGAG	MLGYTYKDIQEFGNSLTVAIDSATDPKVKQGLLTIWDFFEGLLAEGYIDENTYYG*
Ga0114974_100016406	F004475	AGAAG	MSNWTEELSDEHKEQIWHFIVETVKEIREQIAQDIQGTSDLWKAKGLNKSRRTTKAFEISAAIARGQNEI*