Scaffold Ga0114974_10001416

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10001416
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19013
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005479	Metagenome / Metatranscriptome	399	Y
F079594	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000141610	F005479	N/A	MPELITTFQALKKKEHDARKFQASLKGVDIGEYEEDKKGGPSFEDMRLKAAGINAVSNDVISLQGNFANQAGFGIGAGLGYSKE*
Ga0114974_1000141616	F079594	AGGA	MITKFGKRFLVSYLAGNTDFTSKELALGIGNTTPNSKGNDTKLAFEFYRVPITLGSIDISQTGTDVDGDPVFSYVAIFQGTIPQDVSGVISEIGLYPSGRASQVKYDSKFITSFENNILWKDSNGYNPGLRVNSDTFTSKIGENMVFFQAPASTSKEYLVALDNFDLSGYSIKDSISLAYRKEDNNVSKIRVKFYSSNTQYCYVDFTPEAMGSTPDKIQSITLDSLFSNTSTTPPDFSILTKLGIEITANSGGTTTVYFDGLRINDEDTFDPAYGLISRSVLTGGNIITKTSGRQVDIEYKMQLGF*
Ga0114974_100014163	F001106	AGGAG	MSFETLKISEIKKIAEDFAVETEGLKNKADIIAALAEEGVTWSVYSKTIKQIEEESENMDTEVLPKFDPKAEQPENTVLVRMTRDNFRYDIMGVTFTKEHPFVAMSRDDAQEIFDKEDGFRLATPKEVQEYYN*
Ga0114974_100014165	F001229	AGG	MNNLVDSVLSMRLDVYRQSDAQDPDTGAIKKDWNYYKTISCHAKGVISNSATTRSSDKQIFDNKYTNDQIIQVRTIDRLITREKVTNICDQEGNPIWTEINFPTETPTVFEVMGTTPVTDPFGRVIGYNSSMKRSENQKIGQ*
Ga0114974_100014166	F001900	N/A	MYENRKGVLKDSTVAQVSAYVYYSAAVISKLTTNKQFKHAFTTVMFDQIDKDFGEYIDALARTRPKSLHHVYEWKKTGNKSARLFKLNKISEEGLSFRVNYEFKPSRSIVPSKGGKRRHMFINKAEVMERGTPLVIRPKNAERLVFEYDGEVVFMPKGVAVTVKRPGGSSARNQFGLAHSRFFSGQLVNSSIKKSGFQRLFNSSMTKALSVPSSIKKVQYSFTPNTIRAQADSELSLAFGGAL*
Ga0114974_100014167	F000258	GGAGG	MTANYKLDAMLELRKYLWNQLYTRNIFDETDYWSDNLNENIIPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTLYSTDISEINEIRNYMTDEFRRMDESARDINKWDDLSDKFKFHSVWVADISPTAPSEELQGFFSAEVILEIKYSRITDRQGRFL*