Scaffold Ga0114974_10001267

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10001267
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19952
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (62.16%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006985	Metagenome / Metatranscriptome	360	Y
F011142	Metagenome / Metatranscriptome	294	Y
F013741	Metagenome / Metatranscriptome	268	Y
F019966	Metagenome	226	Y
F035668	Metagenome / Metatranscriptome	171	Y
F043286	Metagenome	156	Y
F047566	Metagenome	149	Y
F068428	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000126716	F011142	AGGA	MAVVKVSGKVSKVFGASNQGLSLVESYKSATGEDYTRTYTVWFAVAHNVPEGADVTVFGQLSTKIEDYEDRNGQAARKVKLDINNAQIDVPPAPVTNAPF*
Ga0114974_1000126718	F043286	N/A	MAIVMQDNQVECCRCGFKWVVNAEKRGRKDLKCISCRVKPATTIQYGKLRCTPHQGLLDADLNPIDSKGRLVLAGLRVCGHKDCVNTTHIVSDN*
Ga0114974_100012672	F006985	GAG	MIREVCSCGAEFETDDREAIALVKTWRRTHKHTEKPHTPDASVIQVSGDNTVALGFQALYDPYNDPMDE*
Ga0114974_1000126727	F047566	AGG	MKKTVIFQRVKAVTDVLAILAWRGFGIFLFILGGSAGVGAALTGNWLDGVIIAWGTLMIGVIGAIGYAIATTGTVTKADVAKASNDAIQKAEKQAETKK*
Ga0114974_1000126729	F019966	AGGAG	MSDFEVSNEYKLQTLNTRLEALNVEGWHNEEAKTVATALGNLEEVERLTANIEIIKSAIVAVKSQITDLA*
Ga0114974_1000126732	F013741	AGGAG	MNEPTKPTNQALLLQIVRDIEILKANSIQILESSRDHETRIRELEKQINRNAWIPALVTAVITSGVILIVTKGMGF*
Ga0114974_100012675	F068428	GGAG	MLEDLVIPVKQTTCRIRTVKDEIPDKDATILEQAVMNPEWPCKTLSNELLKREIKVSDTAIKHHREKRCSCWKT*
Ga0114974_100012677	F035668	N/A	VQAVNIFSKDYKAGQIAGRSAEANRTSNALIELERAEIISNAQMQAILDLILEKLTDAVDID*