NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10000991

Scaffold Ga0114974_10000991


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10000991 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22799
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (73.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002489Metagenome / Metatranscriptome554Y
F003422Metagenome / Metatranscriptome487Y
F004840Metagenome / Metatranscriptome421Y
F008132Metagenome / Metatranscriptome338Y
F013527Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_1000099111F002489GGAGGMTEQQSSNLEDNLPMVNYIMLHRIYDLLTIIANKLEPEKTSKMVEYHDAGYLLGPSPSYTPEDNE*
Ga0114974_1000099122F008132AGGMTKWDTIQADVADAYIHLDEVEDVEQEDEQDFFGFSKAIQLDHLTDEELDEVFNMFGDK*
Ga0114974_1000099127F004840AGGAGMYKLTCAYDGNAPHWTVEYENEYGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTKVFYRAGRKVVIK*
Ga0114974_1000099128F013527AGGMNIYEFNAFINVEAESYDEAIDVFQFQLKYGINKDNVYVADINQLTNNESVEV*
Ga0114974_1000099140F003422N/AMDKELISSKYTFICDPNECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIQPTETKEEQMETTVSPAVEYNPDLLVTYKIVSNYSDPEYATDKVRNIEWELHNARTNSKAVSAIQNRIGLVKDIITEAYSDSDDQETLRSIAEALDIELTRDVEWSATIEVSGVIQLDLLADSDTDIESEIYDNLYVESQNGNIEITDTEVCNVREN*
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