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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009183 Open in IMG/M |
| Scaffold ID | Ga0114974_10000457 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34425 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (77.78%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004761 | Metagenome / Metatranscriptome | 424 | Y |
| F013753 | Metagenome / Metatranscriptome | 268 | Y |
| F040004 | Metagenome / Metatranscriptome | 162 | N |
| F104779 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114974_1000045728 | F040004 | GAGG | MKESRWDIPATGKYNFKTDLAFGKKGEDQVKRFLQGIVNGSFEVKSDRYRNGKMVVEVAQNPRQHGWKDSGLMVTEAQWWVYVYTMNQAMIVISTDRLKRYISSLPKSRIRLFAEGSNNPARGYLLLPEEVMPLLYDSAHDGNVEE* |
| Ga0114974_1000045739 | F004761 | N/A | MVRNISDLDTTDLPNSVLDDFVKEAFQRIIVLERRWPKYQETYTFNTVANQRAYTIATIGDIREVISLVDTSTSGSRLTMIPYDNAEEIWLGNTDVASRPYFYALWDGQLHLYAKPDAVYPITVRAYRNPVYTWLTSITQTIDCDEWFHILLVYFVLSRVYQRQEDPELSQMYLKSFEEGVAMARRDLMKTPSARPMLLSGGRQYPTMRRWLQTLGATLGT* |
| Ga0114974_1000045740 | F104779 | AGGA | MNNAQLSGAYYGVPVQGIRPAAETPGSRLASPSGPYLGRGNFCSANDDTCTGRKAKGTDLCMGHLRSAGEA* |
| Ga0114974_100004575 | F013753 | GAG | MANNEEMTLTVPQQNYLDWLCTAPSERVPASKAKYALEHTIDETTLRRWQKKEVFLNEWKKRVDDIQGSPERTQKLLDTLYDKALEGDTKSAQLYLQATNRMLPPTVTLQSTKKTNELTDRELDELIGQIAAHEKSRRGLKVV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |