Scaffold Ga0114974_10000332

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10000332
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40201
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (67.19%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F005087	Metagenome / Metatranscriptome	412	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000033249	F001915	AGG	MEREWQLAHPLHDVDDIVEMADSVFGKEADGILTRDRNVFRKNVTITATTQLFDKGREFLAVCRTKPEHKKIVVDGFLDHELIESKLLGYCWFDRGGYTTYANEEISNAKFHHLDLSLPARQRVKLIHEMIDQHILWASTWGIPVICSTSIRSEHDGFMKIHKKRGFTVNGSYAWIRTENGLKGLHEKA*
Ga0114974_1000033250	F012670	AGG	MKKPKDADLLFGEIRPEGSLVTSPEELEKKKHFMKMKRLEKRAMGLATGEKFPKEEKKPIGRQKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSEEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV*
Ga0114974_1000033252	F099270	AGG	MSTNFLYAQAPNRKGNMSKQPPSKSGGATNVTNTKHGVSGPTGQQGAPKAGGDITGRHQKVQVSTHADYCGTIKNDGYMNKSVKNYLG*
Ga0114974_1000033253	F040590	N/A	MSYGKVISGGARMTNGLTKNINGKLKSFEEGHKRSQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTVPKLPTNV*
Ga0114974_1000033254	F001059	AGG	MATYDIEALKEDLPTAKDLAQFVYDKVGISLDLVGKPKEEQYLVARNALEGKKIPADFQTDLNPYIDRKELIPVDEKMQLPPRPADLPDPGSQVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPIEQVAVGERINKFGQKQPEKFSWIDPRTEEILLRRPDGTFTEKGRGLYAFCVGEKGGGIWTLIDRNVMNIAEKNVTNPWA*
Ga0114974_1000033255	F006264	N/A	MDDHSTTFRLKLSSQAETCARKTLEWLQKDLQGDRELAPQDVYYLASAADLLLTMRDVYGKK*
Ga0114974_1000033261	F000857	N/A	MEKAMTEDDDIKVNEEYYSKGILEAGVDGVFRHNDKLFNEVKSGTWSQTFKTDNIDYKVGAVNGNRYVQYEQKNVENVKEFCKQQREFYKIHGTDNPFFAGTAHMMQLPKCFAHEISSRWFNNRPWELIKQEKKDKILFYAIVNEYYSDFVCHPSGKIPIPYNPAIPTK*
Ga0114974_1000033262	F005087	AGGA	MALFIQSANTLVSRIANWVGAIPSSVGINATAYNTTTKVITCSANPTSVVSVGDFIGFSVMGPYALAVSVTSTTITVNDPEGIWDDAVVPTAIIKVPTQSTIEITQSIQMAELKMRTIELPALRSNPYDDVEPAHLITDAKGMAPIPADMCFPILFFQESQPSNQEYEGTNLGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGENVIIKAYYQRVFPFLFSSTADVEYPVVQSNAILASFPEGYFYGTLWAYYDKNKNTEEAQKWLSRFDDSYGLIEDQNYKGKWRGGDQHLTSEFQPRTYRYSFK*