Scaffold Ga0114974_10000149

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10000149
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60601
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (68.55%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004477	Metagenome / Metatranscriptome	436	Y
F022885	Metagenome / Metatranscriptome	212	Y
F023846	Metagenome / Metatranscriptome	208	N
F029757	Metagenome	187	N
F031096	Metagenome / Metatranscriptome	183	Y
F040104	Metagenome / Metatranscriptome	162	Y
F047683	Metagenome	149	N
F077219	Metagenome	117	N
F078720	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_10000149105	F047683	AGGA	MTLTVEQIETTFAAPAEGLADSYYPVLAYWIPIEKLEEVRAAYRATDTTIRIRYRGPRTVSVGREMSRPDKTTYTRSYHRAMQDCLIADATHFTVYDYTAR*
Ga0114974_10000149106	F029757	N/A	MYIISKTGYPGYMMMKGNIDMLTLSDINVLTNSKDGDIYSDLYKDVYGSRPRYAQFRDLEEFQDDYDFLCNKLDEQIEQQQVEQARNFVEFVARVEETMQIVEGATRERAIEIIADAEGISEGEFDFYGLEILEYRFELKFGSISRWLSE*
Ga0114974_1000014912	F004477	AGG	MSLTSFFSSPPITSFEQLELEKGKIQLTIMKMVTLVLSSIMLAVVGIFLIGLFLPNHVIDNNEIFKIIGPAFSMIIGAFVGAFATMMGMKTAEFDPNVKTQELGKTDHKQLAEAHVINAQAETIETENEIKMMAAIDKYKDSDEDFGPF*
Ga0114974_10000149122	F077219	N/A	MTELLEKLKTVFSVTEPGLVIDKDFLQLREDMKARLNQGTRNDFKFTKDVDCLVLEEWLIKKNIVLGPRPEHCEKSGACVYDVRVDDAYIDFKCIDENLYYNVSEQKLQTHPWVQEGIDAGRLTHYCFYRMHRPEDRPLRENDVVTFELINVLNSQYVVDSLMPSKFDGKFYKVPKYV*
Ga0114974_1000014918	F023846	AGGA	MSDRAKKITELTSIGTANTSIASGDIFIVEDISANTTVSATLSTLRKAIVQGPYANNTAANTGGVALGQLYYTAAGDVKVRIA*
Ga0114974_1000014933	F040104	AGGA	MSSGYTIELDWETVDHVVVGQLRNTWEALKGNLGNGDWVFVWGDQEADDAEIQKRIDALELLLAWYSTPDELVEMGLKEGA*
Ga0114974_1000014940	F031096	AGGTGG	MMKDTNMVTNLSGGAFELRTGRKWTWGISPFREKETLKLRWEKVGPIGGRHFFEIDGVQYSAKQISPHLKDIQMHTEGF*
Ga0114974_100001495	F022885	AGGA	MTELVDNEYGIEYEQIPIKKLRIFRVGKQWLVEYQRYVRLWAPWDHFWWYNDGQYVEYYDALARVNELKANGYANVPRFMKVKTFEVEQ*
Ga0114974_1000014972	F078720	N/A	MDNKKIVAGVAGIAVVGILSYFGYRLVKEFNELDIDFFGENIEDSYHQRYPTKNGNE*