Scaffold Ga0114974_10000051

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10000051
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89670
• Total Scaffold Genes: 172
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 102 (59.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007580	Metagenome / Metatranscriptome	348	Y
F011584	Metagenome / Metatranscriptome	289	Y
F013086	Metagenome / Metatranscriptome	274	Y
F020169	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_10000051148	F020169	GGAG	MSSTVRISWSRDFGNSEQWNDVCAWAIEHFGLPGDRFQSHANVNYMDFVFKSNKDALLMALMWNAPIVPNDDLTVEHVGKIFNA*
Ga0114974_1000005140	F013086	AGGA	MDDQELIGYTESFAGFLPLYAPAKGSIVTQAFILCTYCRGSIYHCMGPRYDAVCLDCYEHNTDVDRS*
Ga0114974_1000005162	F007580	AGGA	MKLEFLEMVGSVPNKIYVFFRDHLGHMSAHTLGWVTIILLHFASIPTLLAVLMAQSDKLPPVDLMVFVWSGLLTLFFKSLIERNFLYIATICLGFAAQTLIMGLILFK*
Ga0114974_1000005179	F011584	N/A	MIEYITTFFALFFTDVFYTYYLRAVQNDEVLKSSVWSVVVFFIASIAVINYTSDHMLLIPACLGAFCGTFVGMKLRKKKD*