Basic Information | |
---|---|
Taxon OID | 3300009183 Open in IMG/M |
Scaffold ID | Ga0114974_10000051 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 89670 |
Total Scaffold Genes | 172 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 102 (59.30%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007580 | Metagenome / Metatranscriptome | 348 | Y |
F011584 | Metagenome / Metatranscriptome | 289 | Y |
F013086 | Metagenome / Metatranscriptome | 274 | Y |
F020169 | Metagenome | 225 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114974_10000051148 | F020169 | GGAG | MSSTVRISWSRDFGNSEQWNDVCAWAIEHFGLPGDRFQSHANVNYMDFVFKSNKDALLMALMWNAPIVPNDDLTVEHVGKIFNA* |
Ga0114974_1000005140 | F013086 | AGGA | MDDQELIGYTESFAGFLPLYAPAKGSIVTQAFILCTYCRGSIYHCMGPRYDAVCLDCYEHNTDVDRS* |
Ga0114974_1000005162 | F007580 | AGGA | MKLEFLEMVGSVPNKIYVFFRDHLGHMSAHTLGWVTIILLHFASIPTLLAVLMAQSDKLPPVDLMVFVWSGLLTLFFKSLIERNFLYIATICLGFAAQTLIMGLILFK* |
Ga0114974_1000005179 | F011584 | N/A | MIEYITTFFALFFTDVFYTYYLRAVQNDEVLKSSVWSVVVFFIASIAVINYTSDHMLLIPACLGAFCGTFVGMKLRKKKD* |
⦗Top⦘ |