Scaffold Ga0114959_10129983

Overview

Basic Information

• Taxon OID: 3300009182
• Scaffold ID: Ga0114959_10129983
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1355
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F073563	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114959_101299832	F002977	GGAG	MNVQVPAEGIMKTNDWGDSRVYRIACNCGDENHNHNIWIEVDACDIVVNIYTTGKTNWWSKTRWYHIWTLLTKGYIDTESSVHLTKQQAFNYANTLLSAVEDLEQFRKKNEQDKNS*
Ga0114959_101299834	F073563	GAGG	MNPKYLYTIKWTQPYATCQMRPYLRHLREEYEIQIEARLARGEFDDAKQVIQRIMSL*
Ga0114959_101299835	F003080	AGGAG	MTTAQDLTNQLIHRAKNLKEFVVEREWEQIPAGIVRFNIQHTQGHLARLFVPALTQTEAEEMVDEWFEEDVE*