Scaffold Ga0114959_10025958

Overview

Basic Information

• Taxon OID: 3300009182
• Scaffold ID: Ga0114959_10025958
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3635
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015062	Metagenome	257	Y
F016247	Metagenome	248	Y
F036080	Metagenome / Metatranscriptome	170	Y
F048757	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114959_100259582	F015062	N/A	MRTKTKHKVSLVAPRLSDEDVDPIEQDELESPNFLSTEGWLLWNQEDIADIRRLIADKMPVKQQFVIDAFLDGLNYADVGVTEKYWRYHFSKGVDFIKKELKL*
Ga0114959_100259583	F016247	N/A	MSYFIVEHKYKGHYVMESITGVEDLDTSGYQDILGIWVCDSLEELQIMEKQIKELRDARPS*
Ga0114959_100259587	F036080	GAGG	MSVNTRIDLESAIMKAWQIVDDLDTFYRYHGDAKKPMTEDEVANTLLGLKQIQEMRMWDLMDTYSRKFELDQYCTDPEKLAARERILSDIFDTKKKKGSKK*
Ga0114959_100259589	F048757	AGGA	MNLKQLLKKAGISNNIIAEVERKAKMTTAMQEIEHQEKAAAMAKMMLNDVMPHLHNALNKTPPSKPKKTIIIPD*