Scaffold Ga0114959

Basic Information
Taxon OID	3300009182 Open in IMG/M
Scaffold ID	Ga0114959_10008952 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009182 Open in IMG/M

Scaffold ID

Ga0114959_10008952 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7038
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7038

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048283	Metagenome / Metatranscriptome	148	N
F063654	Metagenome / Metatranscriptome	129	N
F063657	Metagenome / Metatranscriptome	129	N
F072296	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114959_1000895211	F063654	N/A	EARTTKVRATLAPRMDPTRYTHSYVVNAVPQYRGFTVNEGDRSVTHLGLITWHQEDRERRNDAGGQIVRLIECDGTYTIRIVGPTTVRDWSAGKLSKARAHNGEWRDVWTGAASDGVTLMEAVARLRALRDAMQEDADAYRRGL*
Ga0114959_100089523	F072296	N/A	MMASSEENMMALQRPQRTSLPAFQRVAGGGEKIDYLITHLCGHTGIIQVFAGSNPDNSRWVQAQRDRDCRDCYTAKMVESDQASVDAGKRVALDGGPKQVPWAQSVRQSRASEMRTWLESVTAVGAGAVKAGRLTQAEYDAGIQDVRAGFSDLMMGCEFSDEDYDHSGYAKWWIDTRKEPLEAGIIARLLPDRDILGAGVFTRLSDDGWTPVDDATLLPVEVEEQPVQRTATPLPGTAPEPFNPHARGRGKGPLKVVAGPAAGQWQREVAELDLDDSPF*
Ga0114959_100089525	F063657	N/A	MNGDLMGDVITEVSVTGAVTTDGRLRFRSPLDVEAWTHDHLVARLGWEFLIDGNENGVPRDTDEALERVQVRYIPEAVRRTMRGRLSDGLYLTWAVYGLDDGRQVEFLERAWHELRRLIARGDR*
Ga0114959_100089526	F048283	AGGA	MKGEQVEIEVTYTPTLIGVGPEVGDDVNASCDAFAVQVHMELSARYPDADITVTRDHGHLADLSVVTHGVVDVPNVLTVRSAVWSDVWDMISPYGRYRRPVRGGILQASVPVVVVRPASRPDVFTILVDDASGDSVIECDEDEARAVMRSGFGAMA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114959_10008952

Overview

Ecosystem & Geography

Associated Families

Sequences