Scaffold Ga0114959_10000846

Overview

Basic Information

• Taxon OID: 3300009182
• Scaffold ID: Ga0114959_10000846
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28529
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (21.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F089761	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114959_100008463	F039455	GAG	VATFLNMGRYGDIVSFLPVLKNEFDTTGKKPSLVVAKDFADILDGVSYVEPIVYDGAFDDITGALEYLKTRNEAATATQVVGIPDVLVGQVYGKHHGPQIICDSFQQDAWRLAGKLDLWPSQPPLVFDRRDKKREEKLIKEIPKNKPWIVVSTGGTSSPFQYSELLWEILNHSLPEFHIVDLGKIKAERFYDLLGIMDHPNTHAMILTDSGPLHLSYATQKPVHALVTDSPYSWHGAAWRPSYASYTRYKNFPRDVTRILGLIRGARPKAIYKNIVHVYQKMPWANQYEKKRNEIAEKTWKTIGCVDLGLDDNCFVRTSAEVIPSETRKIPMIKDMIRLACVGRDDESVILLTNTDTCVASNLIQRLEGTLPAYSYRRDFKRIDEPMHHDEISSGSKYAGCDFFAFRVGWWRRNHHLFPDMVLGRHSWDRLMRELFKIANGREIEDVIYHEWHPSLWEGVELQRDPSNLRNCKLAREWLIERKIPLEELEHLNYEGKFKRPDFSRLRT*
Ga0114959_1000084645	F089761	N/A	MDNREYRKVVMNLRYPASERNKPSIMLLRSLAMELELDAGNAPGGYGGMKMERQRLSDALKEKIDDPRLSDWDRDMIKGL*
Ga0114959_1000084654	F048735	N/A	MIYNGLCLDTPKDTTYGIPYFESSPQFIRELMAYVYTRGEFGRRERIKRGIRIEDTDLMNPAQHMVNCFNLIYGNDVLLQSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWICAPNVTSTYVASTSLDASEDRLWGKVCTLYRIAMRNIQAQYKGASIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPKGGEGKRAVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPAATANNPHTELCQPDDPMEWESVNRYTKKWKTRTGVALHLSGEDSPNFKLPDAEIPPFDRFLTIQGETNTLKRCYGNKNALEYWRNVYGWWPDNSVELTIFSKAFIAGCDLNFEPVWKGRTKVVCGFDPAFTAGGDRCAASFCRFGQNDAGRNIGFYLGTREYSSSVGDVFEESIAIQLVKDCIEYGVHPRDFGLDISGDGGKMMRAIIIEWSKYHPEAMFLFPISSMGMPTERKISNLDKRTCKEAYDRLVTEYWFAVHTAFSTRSLVGINVDAHSQVVNELCSRLYYHKGRKVAVEKKLDMKQRLKKSPDLADSLTYAVQMLRRAGLEFNFEEETESLDILEIRDWENKLIHSKNNVEEEQMEEDWGYGGRGCDDDGF*
Ga0114959_1000084655	F030662	N/A	MRLKDRNGPIPSGLWYEYSDDKGTRYRVNGMELTYGLQFTNKVKSDMQSNNVQVPDNLDYLIEQQICGRIPSQYCWQEAGDKVASVIHTFAHLGDRVAASLGIHSNLEQTAKGCTACQKRRQAMNQTLG*