NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114959_10000727

Scaffold Ga0114959_10000727


Overview

Basic Information
Taxon OID3300009182 Open in IMG/M
Scaffold IDGa0114959_10000727 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30749
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (73.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053029Metagenome141Y
F071904Metagenome121Y
F086508Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0114959_1000072712F053029AGGGGGLQTINTNSQEKIYLEVYSNGVLSQADSLPTLSIYNADNDTYNPGGILSQTPLYTNLNAYNESPTGKYSYQLTSNITKINMVLEVKWSFTVNGVATTQVDYYRIETPYASISETMDFLGYVPVESSPNYIDPNTIIKSEKMARTIIEGYTGVKFYKYYGGQEVTGIGANTIQLTEKMLSLDQIYENEILVYDQTQSPVYNTFGYSTDISPTGYQLRIWYPGWANGWDNQMDPTIFEYGRFRDNHLYRFVGQIGYNYVPEDIKLASMLLQQDIMSNDFNWRNKYLSQVSLSEISFKMANGAFNGTGNVMVDNILDQYRKSNIVII*
Ga0114959_1000072713F086508N/AMTRGSQMSFTDLKITELKKVADSFAIDASELKTKSEIIAALEEEGITYQMYNKFDTAEKQDIKVPESEKQKREKKIMSKTSNQVLVKMERNNHSYQVGVYTFTQEHPFLAMSEKEAQSIFDTEAGFRLATPREAQEYYA*
Ga0114959_100007279F071904GGCGGMTTDYSRVAVSDIRNVIWDQLQSYGILNSNDYIPSASNGFTTPLCPIVPSQQVPEFNNLLPGKTYITYDILQRNTGVQWWISEEAMVMRVISRSTSQILTIINFLTDFARRYELSAADINSYAQKTSSPFKFLYCRLDSADPLQPFEDEGGFMVGDFSFVYTYTRSIDSSASNTGRYI*
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