Scaffold Ga0114959_10000063

Overview

Basic Information

• Taxon OID: 3300009182
• Scaffold ID: Ga0114959_10000063
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96017
• Total Scaffold Genes: 144
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 113 (78.47%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F006979	Metagenome / Metatranscriptome	360	Y
F008023	Metagenome / Metatranscriptome	340	Y
F008806	Metagenome	327	Y
F009327	Metagenome / Metatranscriptome	319	Y
F010448	Metagenome / Metatranscriptome	303	Y
F012098	Metagenome / Metatranscriptome	283	Y
F014843	Metagenome / Metatranscriptome	259	Y
F016389	Metagenome / Metatranscriptome	247	Y
F019092	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114959_10000063122	F016389	AGAAG	MPLIRKFAVQGHAVPATAHSPRGPFPPEILEQPRMQDSDYQSDSLHAGLDDVRFFKCKDCDEIMLEAELDTHECDDE*
Ga0114959_10000063125	F012098	N/A	MPKVHNIGPKYFIQLLDLPVIWGNKIMVRGWTQEIEEPFRTANPFLVRLPKYKAVAFGKWNGFKTEEEALKSALNTREVTYDDFTEEAGWTSPNSDRETSSEDSYSRLDSLDGTLNVHDWQTHYRMAKESEQ*
Ga0114959_1000006313	F008806	N/A	MSFLLEEDKAIRDLLKGMVVTDQKSVTEAGPQRNVDVWFGQPDQEIRAQSYPYITIDMIDVSEDFQRSMRGLVKPPYLQDPTNMVDGVQATQSVQGVDEVPYDGTVHNWYIHYPIPVNIDYQITTYSRQPRHDREILAQIMYTKIPLRFAVLEVGNNDAQGTLRRLDVLDISKRDVTEQGKRLFVNAFTVRVSSEIAPETYTQVYKALQVYATGPTDSGSQVIGRGTFTPISFTISS*
Ga0114959_10000063132	F008023	AGGAG	VANTPTSPLDATGRAAEQAAKKNAKAIKDRKDEISIAAQVEAESLENNIFDPKKPDTPLVLDEIENVGVTTANDTVIIRTITDIEEMTYGVGNHYTFKAGVKYRVSRGLANYLEQLGYIWRPN*
Ga0114959_100000633	F009327	AGGAG	MRGSKVQGRFKIDFENKSMEEGVVDELRDPVGTEVDWWVFDQNYLETHPTDVYDDTYDTSNQEAGKGRRWNTPIKLPVIMAQQLRGTNIMNERGFYVVDTLRLVVSVADVNRVLPVMLTDPNTHIKDRAVFQGEVFVPTRVLPRGRYSNFYSVITIDMNLVNSEELVNDTQFQTYAN*
Ga0114959_1000006336	F010448	AGAAG	MKNGDISNVSSPQVIVTATLLLTLNLEEEKRLLSKKKLVKVGEIDLLAANKLWIMTNNYGVSLELAGFEDEGWTEELLDKAFEKLERRAVNPFNYWQLYESPHEIVGLLPYRANLKAVIDVPGRVAMYGSAGVQLDNI*
Ga0114959_1000006362	F005167	AGGA	MAVNSSRSMNSSLNEGSTDGKYRKARPDTEVIPGLGDEATLDNRQSLHPFYGFGFLTSEYPNKVNPGK*
Ga0114959_1000006366	F019092	AGGAG	MSNIPVLGEKKMDNEPMFRLLYCLVCQTLEELPPYDGIPEQDHLLAIACEQHVFPSGEPHKGKLFVVPLRAWAKSESKKEIIRQIKSGGSKGLAEIDDTFYESRSTFLEGAMECYKRHKKPKDGCDDWHAKDRLLVPNTIKERKSEGMARYQDEAGPKTYLCDFCPVAIGVAQRKRKLLGIEP*
Ga0114959_1000006369	F014843	N/A	MTSRHTEDAKHWLQSHGIINYDDLIDSSFALEGEDLKKRQFTLSRSRAPIEMYVDSDPTMCAWVFEEQHIPAVLFSHPGFAAVENRPDAPKKVRRWSDIEASITRVNISRSENAQKPKEAELWSD*
Ga0114959_100000637	F006979	AGGCGG	MSKTFKADGEKHTVKKNKNGDVIVDHAGNKGKWDKINLTKKAGAKNIQQGVKAVKKYHRTTGK*