Scaffold Ga0114959

Basic Information
Taxon OID	3300009182 Open in IMG/M
Scaffold ID	Ga0114959_10000017 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009182 Open in IMG/M

Scaffold ID

Ga0114959_10000017 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	127972
Total Scaffold Genes	135 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (10.37%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

127972

Total Scaffold Genes

135 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (10.37%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002739	Metagenome / Metatranscriptome	533	Y
F014380	Metagenome / Metatranscriptome	263	Y
F015602	Metagenome / Metatranscriptome	253	Y
F028802	Metagenome	190	Y
F031491	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114959_10000017106	F014380	N/A	MALVNQIDKRVKMDRFDIVKYQILTHCYLNKISVSEADLNCLTYLALEGDQELTAFCSKAHGQHIFSSIQSVRNCLTKAEKKHLIKKEGKNRKKIFIHPDLKVFSKGNIFLDYKFLSIATQEV*
Ga0114959_10000017124	F002739	N/A	MAKKVKVSAGGEKHVIYKKTSATGIGKGKQGHIMVNHPSTDKGKWDTIDLTEKAKAKTVKQGVAATKKWHKDNPYKKK*
Ga0114959_1000001731	F028802	N/A	MNKTMMLITSTWGSNAQKTFKLIPVTDDCPYNEGIYDADSKVLALISKEKKESMHMLPKLNEWGDLTPMKIGKRPNGKDYAEERKTLETFYEYYVENVEEVKYLLTSLAINSDSFDYSVYLDGAPKSKIEAAPSLIQTI*
Ga0114959_1000001740	F031491	N/A	MFQTNLQQAKVDATNAQWKKDKLEAIRSFHQELISDLGIERSDFNMKMPFYDQKARMVVGIFASEFKKDKGFFFELVTRQLDPADEERKVYRVAPSGSYEEEYELNEKGSYLVPVEELRVVNPDSVAISKSSAVTASDNFLKGTQPLVERYKAPAPMEDAAYSEMTIRDYYAIHSGKPVSAKNWLNELIKNNK*
Ga0114959_1000001761	F015602	N/A	MILSGKYRKERGLLKPLTIGSMKQYEQFVSHLEDGAIVEFFYEVQHDDGTLPQLAKLHAMIKQLATHIGETAENMKLLIKDRAGLCIAREVSGREYFLAKSFGECSREELSLAIQAAIEIGEQINFPLG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114959_10000017

Overview

Ecosystem & Geography

Associated Families

Sequences