Scaffold Ga0114969_10114493

Overview

Basic Information

• Taxon OID: 3300009181
• Scaffold ID: Ga0114969_10114493
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1724
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_101144931	F105192	N/A	MDISTTQIIITLIAAAISGAFTAQINNIRAKKERLARAEDKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELERTLLKLSHIGMHSDED*
Ga0114969_101144932	F072349	AGGAGG	MDKVLCYSCNKSKNELAAKKSVLLPINLLLCKSCTDNKLEPRWIVILAGRQFGSGHVKEHIAKKKYFGADITASELLI*
Ga0114969_101144935	F066776	AGG	LLHLTEKGVEIFIQRSQTKLQESFWKNYDLVIWKKDIGGYTDIKGMYRQDAWGKAEKISVSREGIWKLPKQYVKYFK*