Scaffold Ga0114969_10060922

Overview

Basic Information

• Taxon OID: 3300009181
• Scaffold ID: Ga0114969_10060922
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2497
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035312	Metagenome	172	Y
F063706	Metagenome	129	N
F065557	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_100609222	F063706	N/A	MNFNMAKKVGRPKKVDLIIETNKAEIEYHKDGTNHDLKYDGKKVDVHITKDDQGTKVEVQSENKFLKAIATLASKFIVKRFKKK*
Ga0114969_100609225	F035312	N/A	MAFNEIAFTVITVLMSAIGYFLKGLHTDLRSVVEEQKKIIETQGRLKGKIELVDNESRFKYEAIEKMTQLEIKHLAEQISELTQSVKKLIEVQLTR*
Ga0114969_100609227	F065557	N/A	DIKQAYVVFEKNVVMPLRDQVEEIVNELLALAKIPGTYILNNFQIINETIVEIEGDASKTADAINSLSPLVATKVLNAMTPNEVRALASLPPIEGGDIIPTETPAP*