Scaffold Ga0114969_10044906

Overview

Basic Information

• Taxon OID: 3300009181
• Scaffold ID: Ga0114969_10044906
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2979
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007263	Metagenome / Metatranscriptome	354	Y
F011299	Metagenome / Metatranscriptome	292	Y
F013527	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_1004490611	F001562	N/A	MEKTQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECCDPIAFAIGLVEHEDYLAEMDNE*
Ga0114969_100449063	F011299	GAGG	MMTRKDYVAVAEILKYASDKTHPALFSKIVNDFAEMFAKDNERFDITRFHKASGYNVPNFTSR*
Ga0114969_100449064	F013527	AGAAGG	MEQYEFLTYITVEAESYDEAIDVFQFQLEYGINKDNVYVADIKQLTNNESAEV*
Ga0114969_100449065	F004840	GGAG	MYKITVAYDSNAPHWQHDYSDEMKAWQAFFQFTDWGTANEYSTVNIYTPELVCYTKVFYREGRRVVTK*
Ga0114969_100449067	F007263	AGG	MIKEYLDENEFYFIKDQIKIHCDEQQFVHVCKAHGEQQGCYYCEFDYDKKCECEG*