Scaffold Ga0114969_10020758

Overview

Basic Information

• Taxon OID: 3300009181
• Scaffold ID: Ga0114969_10020758
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4640
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020167	Metagenome	225	Y
F020910	Metagenome / Metatranscriptome	221	Y
F023106	Metagenome / Metatranscriptome	211	Y
F034575	Metagenome / Metatranscriptome	174	N
F035304	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_100207581	F020167	N/A	QTIRTIDELVNEMYMDNEQHLEYMENMNGGDCDCSIHTTLNTIVKYWWDEEN*
Ga0114969_1002075810	F023106	GGA	MRISRRVTDEEKVAMKLGNTISDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYGKNNF*
Ga0114969_100207583	F020910	AGAAGG	MWSKYTFVCDPDECDALVEFTVRDDFGFPLGVVQMKCPCGRFLNYISYEEAYAPIITDVSKVTPTRLVKINTNPYN*
Ga0114969_100207584	F035304	N/A	MDLKTLQEYIKIYIISLKQDIENEDGADSIVPYLEGCIDACQHVLEVSNG*
Ga0114969_100207585	F034575	GGAGG	MDNTTLDPYLMKQVEMGMDGADILHGHLKTLMYEAEHQLDLCIEVEEESGEAMDSMARTEATGYLDALAEVYALTYAIAFAKEDVKNRKEILGE*