Scaffold Ga0114969_10006505

Overview

Basic Information

• Taxon OID: 3300009181
• Scaffold ID: Ga0114969_10006505
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8970
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F026507	Metagenome	197	N
F029096	Metagenome	189	Y
F031795	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_1000650516	F031795	N/A	VTTYTPYPKVVFAGAVEYADNTISSIGISIGRRDIYEQSQPGIASVRLWTDASTALNVNLSDSVAIQIKDSTNAYQTIYTGIISDIDITLDAYGSQGSVAIYNITAVGPLANVNKQTTGYVGFAQEFDGTRVLNILSDSFLQDWNEVAADLIWSSVNNTVTWATWDGSNIPLVNNLIGDIDTPGTYELAAYTGGATDALALVQSAAQSGRGFLFESRTGELNYDSYGARSVYVPLVLTADDLLAGGLRQSAQWSEIVNDVTVTTNTGLEAYAADYTSQQAYGQLAGSRSTTLQNLADAEIQATAFLESRAYPRTYPEELTIPLHSPTVSDATRDALITMNVGGAVYTQALPAVFGTTFDGFVEGMKWNLTRYTSDLTLVCSALSETYPHKVWLQIAPTVTWASYTPITQKWQDL*
Ga0114969_1000650518	F029096	N/A	MDTMAETRTTITVRPDLADYRGLLKVLNLMEKESQVELKDDVYSISSWTATGIQQAGFAHPYYPKQARIVAETVRAARDRVPTVYVGGSKKMPVTRKITQGNPAPSAGQLLFGNEFGGDRNAFGNANAFPNGGFRFPPRTSREGRGNTGYWIFPTLKAMQPEIKRKWFEAVNKVLDNWARTP*
Ga0114969_1000650519	F009265	N/A	MDQLPEHNPENRANLMKYNVTTKQGNNYIVSDESAWLWVEIERELGYTVSQAADKMSQGSLDVITCMLFKAAKAAGNTKLPSQQAWVINEFETFEVVEDSPKES*
Ga0114969_100065057	F026507	GGA	MIDELCEHGATSPRFCALCRHQAIELMVEGITIAKESQLNWHNEAVICIRNMARTGKPFTAEDVVAEIGAPSGSGKVIGAAFNTVARSNMIWRCGERPADRKSSHRRMLAVWRGGQVQEQVRLFDER*