Scaffold Ga0114969

Basic Information
Taxon OID	3300009181 Open in IMG/M
Scaffold ID	Ga0114969_10005249 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009181 Open in IMG/M

Scaffold ID

Ga0114969_10005249 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10180
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (23.81%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10180

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (23.81%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F005388	Metagenome / Metatranscriptome	402	N
F029798	Metagenome / Metatranscriptome	187	N
F094803	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_1000524921	F002227	N/A	MKLTIQSTQNAQTIVDLFNAIITGNEAEGATPLSIYDEDKHICSLIGKSGEQILELIIERESGDKLQEVGHPAPSPKSL*
Ga0114969_100052493	F029798	N/A	MANLSCADALTLINEAYGASCKSPRERVLLELGLLWEASTLGGTADITADNTVIDSSSTMITADMTEFI*
Ga0114969_100052496	F005388	AGGA	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLIQTSFTTTSIEPTAAETWAAITLADGAGTNACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAIADSSFTQTETIPAGVNEFPWIDGVSSGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRSDLNIADTGSGEGSTLLKRIGANRVIKNFRHVPNLFPPRFSYSGGKYTLVQPFTSASGTKGTVFSVNPTWTTAAYEGAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLSVDCADPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS*
Ga0114969_100052497	F094803	AGG	MLRGMASLAGHWNEIRARYLAGEELSAIADDLKLVRMSVAARASRAGLPEIRRQMQSVCKEKKIESLESLSALVRSKLAADAISTIKRVDTYDLDGIKDESTREQILGSVAKRSALVFGWSDQSEASSISINLLGSMPDRMDNITLSNKTIEADTIE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114969_10005249

Overview

Ecosystem & Geography

Associated Families

Sequences