NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114969_10005184

Scaffold Ga0114969_10005184


Overview

Basic Information
Taxon OID3300009181 Open in IMG/M
Scaffold IDGa0114969_10005184 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10251
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (52.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011740Metagenome287N
F012434Metagenome280Y
F016936Metagenome / Metatranscriptome243Y
F024061Metagenome / Metatranscriptome207N
F059946Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0114969_100051841F011740N/AVNSITTADRLRNCVTTYDAARGTAQLSCEIMERLVEMHEMRHTSAADLCRRLGTLADLSPSMFLTTVRLGSGDVHAVRQSFAEMAEDTGRTRQALHYEWAHEVAKVRIVFPELAQLMADYRQSTDKPELEDAEEWW*
Ga0114969_1000518410F059946N/AMNKRKSDEGKRIQCDAMLAQFTPVKTIAMALRMSRGTVSERAKRAGMHRHYITEAEVRLLFKHRVGGGAK*
Ga0114969_1000518414F024061AGGAGGMNAGEIKNTAVINNATEQFRSLLETHFIAIARAAEESFVEDDAQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETEAMVDPLQSKLGLVEDAK*
Ga0114969_1000518416F016936GGAGGMTLDLIHAELVRIREAIESRPYALGAPAAKPAAPRSEEVPLPTEIIPNAGDVQVHFGKNKGVALSTLGDRSVAWYAQEPEPRLGNNGKPFPPRPEDVLLRNAARTLIHQKRGTLPSAVVAKVIEAVSMVHDENVPF*
Ga0114969_1000518420F012434AGGAGGMSTTTALTRALVLAILAPDQSRADRAIALAESIAAGCTTKQVATAKRNAAKLLRA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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