Scaffold Ga0114969_10003186

Overview

Basic Information

• Taxon OID: 3300009181
• Scaffold ID: Ga0114969_10003186
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13261
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (65.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014968	Metagenome	258	Y
F016389	Metagenome / Metatranscriptome	247	Y
F093195	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_1000318611	F014968	N/A	MIVTLSKEEVRACADIALNRWMIKFGSVDRPNYAGENKKYLEPEIAANVRTIVAEYAVAKLYKQPLTFPFYTNEEHYFRKDFPDVMPCYEVKSVRTKDEIPVFPKDIRPGVILVGARVLDRDYYSEVEVYGWLPVEECTKDEYHYPPENSWRIPLNKFNDTIPE*
Ga0114969_1000318626	F093195	AGAAG	MAGAIDKGHDSYNHFNDGLQTRVNPLSSIDKKILNFAAKVSANPSIKTHGQILRNFGMYPPEFWTRAQNLSEHPDVDPQHKESLASMFSAPSRTGPMGGGAPVDTESKKFSHGVEW*
Ga0114969_1000318628	F016389	N/A	MKVIRKFAVQGHYVPTSSHAPRGPFPPEVLAGPQMDQSEYHADSLHVALDEVRFFKCRDCDEVLETTELEGHNCEDFK*