Scaffold Ga0114969

Basic Information
Taxon OID	3300009181 Open in IMG/M
Scaffold ID	Ga0114969_10002991 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009181 Open in IMG/M

Scaffold ID

Ga0114969_10002991 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13743
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (63.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13743

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (63.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002433	Metagenome / Metatranscriptome	559	Y
F007466	Metagenome	350	Y
F032154	Metagenome	180	Y
F047498	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_1000299110	F007466	N/A	MTQWAPVWRVKIAGTDITDSVLASLNITSGRTNIYEQAQAGYCSITLIVFNQVPIGYDINDALTIEVQNTSAVFVPIFGGSIVDVSISVSEVGSTAYTQEVTITALGALARLQKALTNGVLTQDFDGNQILTILTDLLINNWNEVPAALQWQNYDPTITWANAENTGLGEIDTPGNYELAQRSSSTTLVYDLVSNLATSGLGYIYEDASGQIGYADSTHRSTYLATYGYTDLSANQALGRGITIKTRAGDLRNDITIKYGTSSASQVTSTDAASIAAYGDLAQIITTTIKHLADATSQAAFYLSLRAYPVPIFDQITFALTNPELDNDDRDSLINVFMGQPISLTDLPPNMAAGNFLGFVEGWNFRASYNQLDVTLSMSPLAFSLQAMQWQDVSVLEQWNTLSATLDYEHALVVA*
Ga0114969_1000299115	F002433	N/A	VSVAEWTAVAGLVLAILGAVYSSMQFMVKSIMRELTPNSGKSLKDQVSRIEQRLDQLILEIAFQQKKD*
Ga0114969_1000299118	F032154	N/A	MEATGVAMGDFEMIKLTTGERLRIDKDGSELRDEVTPPAIEWCDRGQHYASKLGGRDDYGMLWICLECQKL*
Ga0114969_1000299119	F047498	GGA	MSKIMIKMKISEADEWAIHNRAAQVVFSLDDLSRVQRYNAKLNNYERVTEYAESLGAEMVVARYFSLDYDVNVSNGKRNADVGKGIEVKWTSYINGSLIIYPNDRVDDVAVLVVGRSPEYYIVGWLPVKAAMQKQFKNTSQDSWWVNQDSLNPIGDLVRSSYATTHI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114969_10002991

Overview

Ecosystem & Geography

Associated Families

Sequences