Scaffold Ga0114969

Basic Information
Taxon OID	3300009181 Open in IMG/M
Scaffold ID	Ga0114969_10000914 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009181 Open in IMG/M

Scaffold ID

Ga0114969_10000914 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25181
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (70.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

25181

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (70.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y
F012216	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_1000091423	F005054	N/A	MAEILINSQSPIVHQIFWNGDIAVADALPVVKIYDVTLDARVSPAVAPTTILATITSTLDENNPGTYFVNVPYSLTNRNKTLKVNWEYSVGSVAVVISDEVQVVTPYIDFNYIQDLGYSTDSSDPSYKSYKELIRAERYARKQIEQYTGQKFYLYDKTLMVYGYEYDTLPLPAKIYQLHTLSVNDILLRDNINNIDNWNFPVQISESGYSIRINRAGMVDNTVYTANGMVPPSINDYSGVFHSGVPYKVFARFGWEKVPENVELATAELMKDYFSKDTVWRNKYVKSISTFDWDFEYTGDAYTGTGNALADNLLADYILTIKAEII*
Ga0114969_1000091424	F001229	N/A	MNLDVYRQSEIQDTETGAIVKDWNYHRTLPCHAKGIISNTATSGSGNKQVFSNKYMDDQVIQIRTAEKLTAREKVTNIRDADNNVIWQEINYPNDTPTVFEVMGTTPMTDPFGRVIAYSSSLKRSENQQIGQ*
Ga0114969_1000091425	F001900	GGA	MLIQAASGLERMMYANQKGVLKDSTVAQISAYVYYEAAVIAKLTTNKAFQNAFSKIMFDQINLDFGNYIDALARSKPKSLHHVYEWKKTGNKSARLFKLNKTGQVGLSFGVNYEFLPSKSMVPASTGKGRHVFINKASIMEQGNPLVIRPKNADRLVFEIDGETVFMPKGASVTVRRPGGSGARNQFTLAHSRFFSGRLVNDSIKKSGFQRLFNSSMSKALGVPSDIKRVKYSFSANTIRSQADSALTLSFGGAM*
Ga0114969_100009143	F012216	GAGG	MAISRLATSNPASNTDILLYTGSRTILTSVIATNKSSDPATIRVWVVPLDQDATPANHVFISYNVSISGNNSLETFRFPVLTGDKVYVRASTGDISFSLSGIDDTTVTGLEYATLEALILGLA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114969_10000914

Overview

Ecosystem & Geography

Associated Families

Sequences