Scaffold Ga0114969

Basic Information
Taxon OID	3300009181 Open in IMG/M
Scaffold ID	Ga0114969_10000531 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009181 Open in IMG/M

Scaffold ID

Ga0114969_10000531 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32773
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (9.80%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

32773

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (9.80%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F007860	Metagenome / Metatranscriptome	343	Y
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F014573	Metagenome / Metatranscriptome	262	N
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_1000053111	F014573	N/A	MWIQDEQLRKEVNKLLKFKTRNSIVKEIQEEGNKFHFFQLTNFLEGKDVSLSTLKKIDFFVNK*
Ga0114969_100005312	F005814	N/A	MELDLLSSKINLNHTCLKLQVSIEDIKAKNPHRTDLINSMEQSLHEIKKAMLVYERLEKEFRVTRQINFDLQHINLELKQDVKDLKKIIEFNNLEL*
Ga0114969_1000053137	F007860	N/A	MKSNYLAGLYFIAGFLTSFSLICQGTELYINFAGLTLFFYLTFSLTEALEDLGL*
Ga0114969_1000053142	F009004	N/A	MKTEFSKVLDFLEVQQQENKYSENQLHLIIQTLCIFLDDEQLHEVERLFNQFKK*
Ga0114969_1000053146	F034772	N/A	MKNLIDYFTPRTKEHKDFLLCFLSALTVFFILANMFYCLMYLKAL*
Ga0114969_1000053147	F009958	N/A	MENRNLEFWKKGWELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELDVEISQKWETETDDNLQPHVLGVRILEDLRLEMQEAINSALQHYNFWEWKTSNDDSNYNFYHEL*
Ga0114969_1000053148	F006463	N/A	MNTGTIYDQLDWWQRQWRGSFDLMLYLEICRIKKNENQKFKPMKRYKATFKTWAYVGAPMKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114969_10000531

Overview

Ecosystem & Geography

Associated Families

Sequences