Scaffold Ga0114969_10000357

Overview

Basic Information

• Taxon OID: 3300009181
• Scaffold ID: Ga0114969_10000357
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39061
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018164	Metagenome / Metatranscriptome	236	Y
F020883	Metagenome	221	Y
F042747	Metagenome / Metatranscriptome	157	Y
F053803	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_1000035733	F042747	AGGAGG	MMGYKYADIQKFGTALNRAEFYLPPSDTETREGLTQVWDFFEGLLAEGYVEGEETA*
Ga0114969_1000035738	F020883	GAGG	MEASFMIAQVETTMSNYTNQHHRLGMRDLAIWQSLGSYYADPEDYDIVLTSTREEAFDRMVADHWHVRVSDAFFGLDYEGIDEEVLDYLKGNKLVASTDEEEEE*
Ga0114969_1000035758	F053803	AGGA	MAIDIELTLDETMDALRFIHLVRENKKQYEVVDKKFDRNNSSYSVNLMGQLGEMACGKGLGLQVDRSISPSGDNGHDLSTPLGKNIQVKTSTLDKLIFNAPELFVSDYAVLVQFFGDKQLPHVDSKFSILGWTTRELFLANHYKHDYGYGIRLVMDADQLQPIEVLINEVSRL*
Ga0114969_100003578	F018164	AGG	MAKVFRGPTYKYRPGREYDLWFVSYPIGKSVVKTGGVWKTIVVPQDSDLATYQRVLRGGYDNVITDAEAVELAAAGYGDYVFNV*