Scaffold Ga0114979_10119908

Overview

Basic Information

• Taxon OID: 3300009180
• Scaffold ID: Ga0114979_10119908
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1619
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020910	Metagenome / Metatranscriptome	221	Y
F035304	Metagenome / Metatranscriptome	172	Y
F040623	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114979_101199084	F035304	N/A	MDLNTLREYIKIHRLSLEQDLENEDGADSIVPYLEGAIDVSNHYLSVLDDTL*
Ga0114979_101199085	F020910	GAGG	MWSRYTFVCDPDECDALVEFTARDDFGFPLGVVAMNCPCGRKLNYISYEEAYAPIITDVSKVTPRTVVKIDSNPYN*
Ga0114979_101199086	F040623	N/A	VDIDEAMSNDIGFELYGPPDMSNEDKVDYLINRFCEDIDTLVKYDEVRDQIQVEYIED*