NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114979_10039191

Scaffold Ga0114979_10039191


Overview

Basic Information
Taxon OID3300009180 Open in IMG/M
Scaffold IDGa0114979_10039191 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2990
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030670Metagenome / Metatranscriptome184Y
F032548Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F036564Metagenome / Metatranscriptome169N
F044916Metagenome / Metatranscriptome153Y
F064403Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0114979_1003919111F030670N/AVKVIRYIKELEDEFGKPLDKWAVYEEQITSNGSWAFKDAKIVKTFQSPYHARNWMENDGKNN*
Ga0114979_1003919112F034827N/AKEGEVFSFFDPESVQRGNHSIYMKIKVPNTTSVNIIDLGDGKAYDFSAKKRNTINDPDEQQGNRVYKLNAKINIVIL*
Ga0114979_100391914F044916N/AMGSKKAHKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRAFAKTSLEILYKENPNLFADHAKIKLKKK*
Ga0114979_100391915F064403GGAGMINPRSKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF*
Ga0114979_100391916F036564GGAGMKLGRICVDLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLANWIRISEDKNATEDMIPEFLLEKEND*
Ga0114979_100391917F032548N/AMKHNQEMEKAIRLLEELVVQADEDCPHDCRTMHFVNALEEASEFIMEYKNAK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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