Scaffold Ga0114979_10037957

Overview

Basic Information

• Taxon OID: 3300009180
• Scaffold ID: Ga0114979_10037957
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3042
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015867	Metagenome / Metatranscriptome	251	N
F018713	Metagenome	233	N
F047570	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114979_100379574	F047570	AGAAG	MKMTDENKLKIVTLSHNIKALCYILDKKTFSEHCVASGTFTEIESLFELVKELKEMNKEE
Ga0114979_100379576	F018713	N/A	MTPDPNLWAEIPQEVKDAAILLGNYFKKKGLDSWTLYDVSSRQNFNGAYNQGLDTAISLVSEGSDMETIICGLENSKKQFPNECGDGIDYTKSF*
Ga0114979_100379577	F015867	GAG	MKYKVTYYDYDSDSYLTKDLYWMASYRGSFDFVPVSDGPKENWKGFHIDGSGVNLFYNDKGMNITVDGFQEMKSGGYGKTTTFIQSVN*