Scaffold Ga0114979_10037166

Overview

Basic Information

• Taxon OID: 3300009180
• Scaffold ID: Ga0114979_10037166
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3077
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009066	Metagenome	323	Y
F026867	Metagenome	196	Y
F043823	Metagenome	155	N
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114979_100371661	F026867	GAG	MSLGRLNDIAMKLRQQNRALSLRQLGAAYGLGYVRIKQMQALPGFPLIAGKVIPSDFDQWRLMRTTGLSSLHRASRPHSAVGKARALKSTSDSRVAWRQIENSLKAAVSSLGLPEANENNDV*
Ga0114979_100371663	F043823	N/A	MTTMKKVKTNLTIDPKVKRNGERMARKSGLSLSAYITTLLVKELDKQKKR*
Ga0114979_100371664	F048834	AGGAGG	VALPTVKDWAVALDAYVAGDREEVVPPGWYTKIEIAKQWGKSDVYTNKILTRMIKAGGAERKVFSIKIKIRERGGKIGYCRRVPHYRLTPVKAGKT*
Ga0114979_100371666	F009066	GGAG	VTPEHEKHLAGIIRDLTNDVDAKYRAGQDQHGGALWRRPVWKDAWDEVLDLCTYVHTLKMQLSVIAELALMGAADESVVAAQSRESCRQILAVLQGFPSAQDKK*