Scaffold Ga0114979

Basic Information
Taxon OID	3300009180 Open in IMG/M
Scaffold ID	Ga0114979_10004915 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009180 Open in IMG/M

Scaffold ID

Ga0114979_10004915 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8842
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8842

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (88.89%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F016643	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114979_1000491513	F001897	AGGCGG	MAFMDNYEGNKERTDRWIATYPQGRLETHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAHGFLAAYSDKMRRWMVEDTCTSALMRVMALVMGGTEKATKEVMASVKTETPAADHDYWTTKFGEVPSYKTREEAEAADENGWAVNGVPMCSHGSMRWNQSKPDAPKAWAGYFCSEKAKEKQCKPSWYVLTSDGTFKPQV*
Ga0114979_1000491515	F000903	GGAG	MIDRIEEVQCMIAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYEYQPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGNAPKMHIVGWMPVAVAKKPRYKNTSQNNWTVPQVNLQPIETLIRSNYAHPAI*
Ga0114979_100049155	F016643	N/A	MTIFNPIWRVKIAGIQYTNYVLANLSTTSGRTNIYEQANAGYVSLELINLDQSNIDIEINDSVTIELQDSTATFVSIFGGTVVDLGISIAASGVVGINQSVRITAVGALARLPKALTDGVLTQDFDGDQILTILTDLLVNSWNEVPAALTWATYDPTTQWQDAENTGLGEIDTPGSYELAARSSSTIDVYSLVSALATSGLGYIYEDAQGRISYASADHRSIYLATNGYTDVSAAQALANSLFVQTRAGDIRNEIVLKYGTNSNSEVTDTDATSVGLYGRLAQIITTTVKHQNDAEDQAAFYLTLRAYPQANFNQITFDLTNSEIDDADRDALINIFMGLPLRVTDLPLNMASGTYLGFVEGWSWRASYNSVSVTALLSPLAFSLQAMQWQDVAIAEQWNTISGSLNWADALVVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114979_10004915

Overview

Ecosystem & Geography

Associated Families

Sequences