Scaffold Ga0114979_10000594

Overview

Basic Information

• Taxon OID: 3300009180
• Scaffold ID: Ga0114979_10000594
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23764
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002099	Metagenome / Metatranscriptome	593	Y
F026266	Metagenome	198	Y
F054861	Metagenome	139	Y
F079803	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114979_1000059412	F079803	N/A	MTQEVSHEQIYERLLAVESKVDNIDKNTEHVIKAFNAASGAFLVLEWIAKAVKPIIIIGAFFGTIYLVIDSKFNGVK*
Ga0114979_1000059431	F054861	GAGG	MNTKLLKHSRELFKSYDVPEHVRRSYRLKWVRSIRHLGDNWLLANHVQRKEQTQ*
Ga0114979_1000059432	F026266	AGGA	MTIDTITFHFVGQLEDSGAIVTVQCQIDEDGDCRDLDSAMYQGIDVLEVISNDQRENLQWEASKAYKAENYEQLTIAHDHEHTLEAIYGLSKPSFNIR*
Ga0114979_100005944	F002099	N/A	MRKLIVVLLSLGLVASTPSSSSDNCSVREFYGIAYTVHNPTERHQQMSRWLTNHQTLCKSTDMVVIWNNLSEWAGSADSAELRHKVVIAYKNAVLREKQ*