Scaffold Ga0114979_10000403

Overview

Basic Information

• Taxon OID: 3300009180
• Scaffold ID: Ga0114979_10000403
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28886
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (31.37%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011473	Metagenome	290	Y
F016246	Metagenome	248	Y
F016922	Metagenome	243	Y
F025916	Metagenome	199	Y
F051687	Metagenome	143	N
F057879	Metagenome	135	Y
F067392	Metagenome	125	N
F093228	Metagenome	106	Y
F094889	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114979_1000040314	F057879	GGA	MTEPSTEPTNPRDTVRHEPVPAGGEAEKLSPFEDASQVPPWKL*
Ga0114979_1000040317	F016922	N/A	MSNPIRLNSRAIQCRADSDGATEYAIRYAGQDFLVTAHSRLEADIAVEYYRPETADESQPDLLK*
Ga0114979_100004032	F025916	N/A	MPTHLTRPLLACRLRDCGAPDCPTCMGAAAARQYLAEQECDHEEHEHGHCLACGADITDALDGTIDAAQDRSPLTPLCAT*
Ga0114979_1000040322	F011473	N/A	MNWKKYITDPSTKRPKRGAISRIAALLGVHYGNVRRMFDGIWTPTEQEAESLRAIVASRTNLAPKKRSDAGKKRGEYRKRAVAKSCAVPPQLKGLRSAGKTALK*
Ga0114979_100004033	F016246	N/A	MSQPDMFPDLPRLLTHEEIVAGFAELLRAVEAMEFWNPYP*
Ga0114979_1000040340	F093228	GAG	MEPVQLANAENAFEGGVLDKKWMFNVVGHLNLWHAGEVKLPSTEWGSGKILVSNTGWVVDLTRLKVPASSQVQSQREFQIVAAGANTVKIYNGTLFGQLPTGFSVGNSPIKTLTVANGDKIYAAITWDRRVLANGDIVSTITSRTIEAAATVPTNNTLTATRYYELATVTLGAGNIPVVAQSRWGPIDDLPGTAISNYYMNSSSTSLQTDYWDLLATGKGKQAGGTTDLAPTYDSIQVAGKGGWARFITSGTNLKIMARATTYNSLGQVTYIGQEYTVFDKPVVCETSVDVLIGLRLNGGYLEGQYRTIKVNAVSTPSPEWVNLITTTASVPDTCP*
Ga0114979_1000040341	F067392	N/A	MVGTLSSVTFDGPGRYVRPFQDKGDTQSFEWHIDCYQLAANFTPFQNARFYSTGFVSPVENMQYVTTTLGTAYLVHEEQPEYTACKGWLKFKRVYASLPITRQEGTSVVHSFQFYSTQPGYDWTEPPPAPEVAEWPLVCTGYYLYEYFLSLWPQPLRAPKITSLFGFLLMTNQVPPNTGTFVSKDSEISIYKGSIIERKTLYVNTPTIAELSA*
Ga0114979_1000040343	F094889	AGG	VSDATLDEHADALDSERKDRAVAMLGLPELIAGVQVEPLTPRRLEWLRAMGNPFVCGGECPIAAIPDFLWYITKDFAFGDDERRKAFLAAILDLDVDEARDGIDEYLDRAFLDAGPGREGVSFYGSTAGLYCSLNTAYPGAGWHLERVLDTPLRVLYQLIKAADDARGCTMQNRRSSPLISKFLCEIEHFELSIVSDFDAEMDAFVDAKCAEGYKLCSEPIQKINLAIPAACQQDAPWIIPMRKVN*
Ga0114979_1000040346	F051687	N/A	MRNSGFKMDMSGIRRKQKELASIPARIFKPEISNYFLRPSLNKAKAATPVRDLATIRENQTGKPNSQYAKWRARGGGQGVTKAQFLADRAPARFLFQLQWVQVGYSLGVNVTASAAVLSAVTRNHDEPDIPQGRGQWHGGETKLTASISVPFLDAPERKYKPFTGQGILTPIMAAQFPVFNRACERKMKRVVAAIARS*