Scaffold Ga0114979_10000046

Overview

Basic Information

• Taxon OID: 3300009180
• Scaffold ID: Ga0114979_10000046
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71015
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (44.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F037078	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114979_1000004627	F009669	N/A	MLSKIFGPNWRSSTSGVTTVIAITTAIAIHSDPSLVAFLPDVAEVYIIGISKLVAVVSGIVFALTVKDAAVTGGTVASTVEAEERIHPHGENI*
Ga0114979_1000004628	F014229	GGAG	MNKLQLAAVALLSVFLGACATTNTGKVDVSTSVENTLPYVKPAVVLACTVVLDQATSGNDRIEKAKMINNVAAIVEALTVGSTPTPAQLQKALNDYLPSEKTHWANYVTVIKDLYAQQFARLDGNGVLAAKVLNAIASGCKDATASYVE*
Ga0114979_1000004630	F010817	N/A	VTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLNEDSGIKPYKDNFANELYLIDSEHLVYFGVLNSWLKEKVAQDNIIDKTIDKINN*
Ga0114979_100000466	F037078	AGGA	MKNQLNITKQSFGETTAFLLEGGKGRITSFHNAIYNWGATNGQLHDMGNGKAFYFYAQPDAVLHALVKIALHSLCNKINAKGMKGGLMSLAKIKAQGQFDNIIDGRFLHTSVSNDTYGFGTITAEKPSDYCGAVSNGRD*