Scaffold Ga0105242_10243647

Overview

Basic Information

• Taxon OID: 3300009176
• Scaffold ID: Ga0105242_10243647
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1617
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033479	Metagenome / Metatranscriptome	177	Y
F046890	Metagenome / Metatranscriptome	150	Y
F054961	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105242_102436471	F033479	N/A	MAVLAALALTGCATTSSSLVRGMTAPNPSGCYIQVFDGERLRGVADFINGPMRYGSLSNLPNGADWNRRIRSIEVGPAATATIWTGPDRSGKSMDLLLDRPYPALPDEFSGKVRSMDLRCEESRLASERVQ*
Ga0105242_102436472	F054961	GGA	MRRYLPPFIAALTVCLVTLAGGARAQILDHRFAPGTPPITVRPSALAQVVSELAGSPVNVPRARILWVVDSHAVVIESDSLFDPTWRDRGRVLVVLERSRSLAIPRSPVSIAPVNIVGIARTLLGIQAAQDVPWPQALTRREIQRLGIRAAILASSVRTADGVELTSATAAP*
Ga0105242_102436473	F046890	N/A	FIDRRAPTTPDVTITRDRGETFLIAVNELGLETKFAMNFGIGTDLRVPLGPAGVGLRLELSDNMHGSPLNIEVAELNTRTDDVVRANGGLVHNLRASAGLVLHFGR*