Scaffold Ga0105242_10000124

Overview

Basic Information

• Taxon OID: 3300009176
• Scaffold ID: Ga0105242_10000124
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56723
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (66.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007132	Metagenome / Metatranscriptome	357	Y
F011178	Metagenome / Metatranscriptome	294	Y
F026373	Metagenome / Metatranscriptome	198	Y
F064021	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105242_1000012422	F064021	AGG	MKKVLLAISVAALALTGCMSAMNTVLPPGRMSEAGEIRPCHRDYRDAQACGNALFNETVIDQIHTGQTLTDVRAIMRHDAERRTVAGSIESWGYITNYTDKVMTWIAFTDQKVSSVTQEPWVRD*
Ga0105242_1000012429	F007132	AGGAG	MSRQTVRMTAGKVLRSEDLIADEKEVAAGILLANPDFGNPHVVRCPWCHETRTLFRDENEGPFTLTAHGWLCESCDVRAASQEVKF*
Ga0105242_1000012433	F026373	AGGAG	MISTQSFDEIRVYAGVAERTGAHFERDTVRRSATFCRSLSELMRKVRASGDGVFYLPVKIWPADAERVDVTKRWLVLSSLPVA*
Ga0105242_1000012435	F011178	N/A	MKITIEDRGRPTLRERLRERLDRAARLRCPEHDQPVVAVAIHGRENGWFDSTWTTCCEALEQQAAAIVKARC*