Scaffold Ga0073936_10038002

Overview

Basic Information

• Taxon OID: 3300009175
• Scaffold ID: Ga0073936_10038002
• Source Dataset Name: Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4711
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045016	Metagenome	153	N
F045053	Metagenome / Metatranscriptome	153	N
F052500	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073936_100380023	F045016	GGA	MTLAIAQPPGVTGASLVNAACRKYQEAVDKFKRVEAEWQTLPTQEAVMLVVETQGILRETRQLLDQGTSQMTGMNSPEWGEATGHNTRNEVAECLQDAHDLGNRVDDLLAGCDRLIETCLAHQEAYERYQTGKALCIVLAGAILTIGVALYFLLR*
Ga0073936_100380024	F052500	N/A	MTTQAQRHRASEIAGEITKLQGIKSAVVDDDNGYGSFNLFIELRNRLEGHYHLSRRIEFEIPLHGLMARITRIIERHGARLEWHEPPRRQYARPGHGKKLFEGYSTDSYKVSVHIPQPAEEVQPHRETQLAFA*
Ga0073936_100380026	F045053	N/A	MTTVASYHIPGFGTVEVVQQNDGRNRFWDLFAASGECLNEGHPFWSKPRRKQVETFLAHDLKEALARIEKECERLQITQEDLDEVIHEAAQASNRRLNQVSEEKQQERLITTAEEQAARANNGGRTSQLIYLLEAYGEAGAVKALQDRHATNG*