Scaffold Ga0073936

Basic Information
Taxon OID	3300009175 Open in IMG/M
Scaffold ID	Ga0073936_10004851 Open in IMG/M
Source Dataset Name	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18405
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (81.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18405

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (81.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.5637	Long. (^o)	22.044	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Finland: Lake Alinen Mustajarvi

Coordinates

Lat. (^o)

61.5637

Long. (^o)

22.044

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008860	Metagenome	326	N
F040987	Metagenome	160	N
F042707	Metagenome	157	N
F067353	Metagenome	125	N
F091222	Metagenome	107	N
F096503	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073936_1000485114	F096503	AGGAGG	MFKLNYRTGRKLVWGTAAIVFLYVDVTATGGIFFWATVYGLGTAVVVATLLALISK*
Ga0073936_1000485120	F067353	AGG	MSKNAERMIRDKNQALITLNALNETLINDLVRRASIRATVDQSPDEGAKSKGGISNPTLNAVVRTMSGKKVADPIYDSVKELAVMLSNIAELAQRIDERVAFITDTKSRIKELVVVYCEACQREVAGTVSDRIRSGYCQACYQAWRREGMPSRYQFELQRREELAKTLEN*
Ga0073936_1000485122	F040987	GGAG	MQSTTLQRGAEERKVILYKNGESFLITVEVLQSLFHEVGHTETLYTPKSEAQAEFLYGSAVRFLQGFQYIVTDGVLS*
Ga0073936_1000485125	F042707	AGG	MAKWYNSSARELIPPMTQKGILDEIEIIEDLVDQMNAAGEQSAICEATYKALYAQTRLTIRALSKTKLTVDEVEADATVQCEEAHLAYLIAQNRLITTREALRAAQSRLDAWRSLSAGFRSAGG*
Ga0073936_100048516	F008860	AGG	MSAFVKSDTRTPVPGDIVFAHSNGIMGRAIRFGEFLRWRKGSHWNHACVISRVTQDGTAYVIQADLHGVNEARLDSVGEYVIIEPPARVNRNKILAFTKAQLGSKYGILSILSIVTDIITPNWFPAMRRKNSWICSAVTGEALRYGGWLHNFPDIYTVTPAQLFDALATTP*
Ga0073936_100048518	F091222	AGGAGG	VKLIDTLTELDFVRESEGDFSNTYRATGFDLRSNVFVNESLNESQVQVCLMPYDPDDEPLWVTFSKYCSAVDNLLKLWTGKDD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073936_10004851

Overview

Ecosystem & Geography

Associated Families

Sequences