Scaffold Ga0105241_10455828

Overview

Basic Information

• Taxon OID: 3300009174
• Scaffold ID: Ga0105241_10455828
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1132
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052156	Metagenome / Metatranscriptome	143	Y
F081922	Metagenome	114	Y
F105842	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105241_104558281	F052156	GGA	MSFRSRIEKIDADYFIPRPADEPDLDSFHAASRFLKDVSRSGSLLLSSSIAGFLFFRSGQILNLEFKWMTFVLIGALSAALIGVFEG
Ga0105241_104558282	F081922	GAG	MRVRGNIWPVVAVAAAALCVLVIVPLMIERQRAGCMATVDAYVSIGDDEVSGDQSSVARNYRWPNSEVPRTAERLRDVTGVTIATATFLVEESLHGRAPRDADEILAGIGLRRLIPNEWRTDQTGVLQTPHATIHLRYSPRNLTVELISVPNERIDGPAILIRIPDAENTALGTRYFESMQLDGIIYPRPFASIADIIASGWQPRLFKQTQIADADRAQLEQWSKVATQQQKQ*
Ga0105241_104558283	F105842	N/A	DDHLGFIARNAEDLTNLELGLLRLERAANTSDMIVEQTIEQVFREAVRLREAA*