Scaffold Ga0114996_11254088

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114996_11254088

Scaffold Ga0114996_11254088

Overview

Basic Information
Taxon OID	3300009173 Open in IMG/M
Scaffold ID	Ga0114996_11254088 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	517
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.2588	Long. (^o)	-156.0227	Alt. (m)		Depth (m)	208
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001487	Metagenome	686	Y
F005131	Metagenome	411	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_112540881	F001487	N/A	MKKFTIEVSHASGPQLSTIALELKIMSNEWAKHGPR
Ga0114996_112540882	F005131	AGGA	MKEIKKQLTRQVKKSRPSLAQEIKDMPMKDFRALWFVVQQGLKIKKKH*

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