NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114996_11139193

Scaffold Ga0114996_11139193


Overview

Basic Information
Taxon OID3300009173 Open in IMG/M
Scaffold IDGa0114996_11139193 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)548
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045772Metagenome / Metatranscriptome152N
F097237Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0114996_111391931F045772N/AEYASAEELVNALNNQKGSTQQVSIKDTIKKQTTETKLTALYSDWEKQNDSIKKDFESQQQSIKKNGGQNVRQW*
Ga0114996_111391932F097237GGAGGMSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDSGNKGTILGVKGSSKDGNTKFVKVFAQVGVLFKGDDKFTGDMNYTEAGGARGLIG*

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