Scaffold Ga0114996_10746983

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10746983
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 713
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012463	Metagenome	280	Y
F014465	Metagenome	263	Y
F081216	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_107469831	F014465	N/A	IMIGALVRDCSKIMKIVTGYKCDARGESVQFAGDHATAWYPLDSFEILSLDP*
Ga0114996_107469832	F081216	GGA	MEESTFLSSFQVGDLITLKHHRGNPDAPAPLAIVVDLEALVFDRIMIQHRGTSGPEMAAPEHWTVVSRNENR*
Ga0114996_107469833	F012463	GGTGG	MKIGDIVKLVLEPNVDWMFNYLEETFQVVDFPTENGVELKMIGTVPDWIWIIGKDNVEL